.jpeg/.png to skip list (also quietly resolved the
biomes/ image orphans)remember/ and
addendum/ noise without directory-specific logicNOTES.txt skip entry — turned out glossary/NOTES
is a directory, not a file; the entry never matched anything-a mode, every scanned HTML file was being
silently excluded from the Linked/Orphan check entirely — not a traversal-depth
issue, a full exclusion. Fixed by removing the stale SOURCE_FILE_SET filter
in STEP 3.index.html-named symlink (9 of 11). Now reports all symlinks in the tree.-a mode bug fixed, 6 real
orphans surfaced for the first time. Cleared to zero: ai-stack/005-inference.html,
orig-episodes.html, root-level Assess_Your_AI_Knowledge.html and
Recommended_Learning_Path-AI-LLM.html (all confirmed stale pre-breadcrumb
duplicates of their linked counterparts), plus glossary/NOTES/prot-glossary.ht_ml
(renamed to .txt)index.html as the symlink, descriptive name as the real file);
no reversed pairs foundTMA/LLM/LLM-Transformer.html — new Transformer Deep
Dive page: the RNN/LSTM bottleneck it solved, self-attention with a worked pronoun-resolution
example, encoder/decoder structure with a comparison table, and why the 2017 paper's claim
held up. Added to LLM-index.html (five pages → six).Day 36 complete • July 10, 2026 • Craig & Claude